mdc_KLIFS_overview.py¶
Produce an overview of a the Kinase 85 pocket-residues nomenclature,optionally mapping it on an input topology. This nomenclature can be read locally or over the network from the KLIFS database.
usage: mdc_KLIFS_overview.py [-h] [-t TOPOLOGY] [--keep] [--verbose] [--AAs AAS] [--labels LABELS] UniProtAC_or_excelfile
Positional Arguments¶
- UniProtAC_or_excelfile
Get KLIFS definitions from here. A UniProt accession code, e.g. P31751 or a path to a an Excel File ‘KLIFS_P31751.xlsx’.If nothing is found locally, there will be a web-lookup in KLIFS, see https://klifs.net .
Named Arguments¶
- -t, --topology
Topology file
- --keep
Save the consensus file locally for later use, default is False
Default: False
- --verbose
Print the consensus labels for all residues
Default: False
- --AAs
Print the idxs and labels of these AAs, e.g. R131,GLU30
- --labels
Print the idxs and resnames of these consensus labels, e.g. 3.50,2.63