mdc_CGN_overview.py

Produce an overview of a G-alpha Numbering (CGN)-type nomenclature, optionally mapping it on an input topology. The CGN nomenclature can be read locally or over the network

usage: mdc_CGN_overview.py [-h] [-t TOPOLOGY] [--keep] [--verbose] [--autofill] [--AAs AAS] [--labels LABELS] PDB_code_or_txtfile

Positional Arguments

PDB_code_or_txtfile

Get CGN definitions from here. If a file is not found locally, there will be a web-lookup in a database using a PDB code, e.g. 3SN6. see www.mrc-lmb.cam.ac.uk

Named Arguments

-t, --topology

Topology file

--keep

Save the consensus file locally for later use, default is False

Default: False

--verbose

Print the consensus labels for all residues

Default: False

--autofill

Try to guess missing consensus labels

Default: False

--AAs

Print the idxs and labels of these AAs, e.g. R131,GLU30

--labels

Print the idxs and resnames of these consensus labels, e.g. 3.50,2.63