mdc_CGN_overview.py¶
Produce an overview of a G-alpha Numbering (CGN)-type nomenclature, optionally mapping it on an input topology. The CGN nomenclature can be read locally or over the network
usage: mdc_CGN_overview.py [-h] [-t TOPOLOGY] [--keep] [--verbose] [--autofill] [--AAs AAS] [--labels LABELS] PDB_code_or_txtfile
Positional Arguments¶
- PDB_code_or_txtfile
Get CGN definitions from here. If a file is not found locally, there will be a web-lookup in a database using a PDB code, e.g. 3SN6. see www.mrc-lmb.cam.ac.uk
Named Arguments¶
- -t, --topology
Topology file
- --keep
Save the consensus file locally for later use, default is False
Default: False
- --verbose
Print the consensus labels for all residues
Default: False
- --autofill
Try to guess missing consensus labels
Default: False
- --AAs
Print the idxs and labels of these AAs, e.g. R131,GLU30
- --labels
Print the idxs and resnames of these consensus labels, e.g. 3.50,2.63