mdc_GPCR_overview.py

Produce an overview of a GPCR consensus nomenclature, optionally mapping it on an input topology. The nomenclature can be read locally or over the network

usage: mdc_GPCR_overview.py [-h] [-t TOPOLOGY] [--keep] [--verbose] [--autofill] [--AAs AAS] [--labels LABELS] GPCR_uniprot_or_file

Positional Arguments

GPCR_uniprot_or_file

Get Ballesteros-Weinstein definitions from here. If a file is not found locally, look for

Ballesteros-Weinstein definitions in the GPCRdb

using this string as uniprot code, e.g. adrb2_human. See https://gpcrdb.org/services/ for more details.

Named Arguments

-t, --topology

Topology file

--keep

Save the consensus file locally for later use, default is False

Default: False

--verbose

Print the consensus labels for all residues

Default: False

--autofill

Try to guess missing consensus labels

Default: False

--AAs

Print the idxs and labels of these AAs, e.g. R131,GLU30

--labels

Print the idxs and resnames of these consensus labels, e.g. 3.50,2.63