mdc_CGN_overview.py

Provide an overview of a G-alpha Numbering (CGN)-type nomenclature, optionally mapping it on an input topology. The nomenclature can be read locally or over the network

usage: mdc_CGN_overview.py [-h] [-t TOPOLOGY] [--keep] [--verbose] [--autofill] [--AAs AAS] [--labels LABELS]
                           CGN_UniProt_or_file

Positional Arguments

CGN_UniProt_or_file

Get CGN nomenclature definitions from here. If a file is not found locally, check the GPCRdb using this string as uniprot code e.g. gnas2_human. See https://gpcrdb.org/services/ for more details.

Named Arguments

-t, --topology

Topology file

--keep

Save the consensus file locally for later use, default is False

Default: False

--verbose

Print the consensus labels for all residues

Default: False

--autofill

Try to guess missing consensus labels

Default: False

--AAs

Print the idxs and labels of these AAs, e.g. R131,GLU30

--labels

Print the idxs and resnames of these consensus labels, e.g. 3.50,2.63