# utils¶

Container for other sub-modules with lower-level functions. They are exposed, tested, and documented, so feel free to use them in your workflow as needed.

 residue_and_atom Deal with residues, atoms, and their names, mostly. bonds Simple operations with bonds between the residues of an mdtraj.Topology str_and_dict Functions for manipulating strings and dictionaries, also a bit of IO. COM Functions related to Center-Of-Mass (COM) computations lists Miscellaneous operations on list or list-like objects .. contact_matrix Functions related to contact-map operations (WIP) sequence Functions for and around sequence alignment