{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Comparing Contact Frequencies: *Flareplots*\n", "We will be comparing contact frequencies by calling: \n", "\n", "* [mdciao.flare.freqs2flare](https://proteinformatics.uni-leipzig.de/mdciao/api/generated/generated/mdciao.flare.freqs2flare.html), and\n", "\n", "* [mdciao.contacts.ContactGroup.plot_freqs_as_flareplot](https://proteinformatics.uni-leipzig.de/mdciao/api/generated/generated/mdciao.contacts.ContactGroup.html#mdciao.contacts.ContactGroup.plot_freqs_as_flareplot), which wraps around [mdciao.flare.freqs2flare](https://proteinformatics.uni-leipzig.de/mdciao/api/generated/generated/mdciao.flare.freqs2flare.html) and automatically sets the optional arguments to sane values and prepares some annotations with the information contained in the [mdciao.contacts.ContactGroup](https://proteinformatics.uni-leipzig.de/mdciao/api/generated/generated/mdciao.contacts.ContactGroup.html#mdciao.contacts.ContactGroup) itself.\n", "\n", "We will try to refine the comparison plots step-by-step, focusing on what the individual parameters can do to show or hide information. This will generate a **lot of plots**, which we display here for learning purposes, but, **in principle**, you could be iterating over the same notebook cell until you like what you see.\n", "\n", "