{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Comparing Contact Frequencies: Bar Plots\n", "In this notebook, we present a walk-through of the methods for comparing frequencies. In particular, we will use [mdciao.plots.compare_groups_of_contacts](https://proteinformatics.uni-leipzig.de/mdciao/api/generated/generated/mdciao.plots.compare_groups_of_contacts.html). And we will try to refine, **step-by-step**, the same comparison plot, focusing on what the **individual parameters** can do to show or hide information.\n", "\n", "
\n", " | WT | \n", "K417V | \n", "N439K | \n", "N439K/K417V | \n", "mean | \n", "
---|---|---|---|---|---|
G502-K353 | \n", "0.998 | \n", "0.999 | \n", "0.995 | \n", "0.997 | \n", "1.00 | \n", "
N487-Y83 | \n", "0.963 | \n", "0.966 | \n", "0.968 | \n", "0.969 | \n", "0.97 | \n", "
T500-Y41 | \n", "0.953 | \n", "0.971 | \n", "0.920 | \n", "0.962 | \n", "0.95 | \n", "
E35-Q493 | \n", "0.972 | \n", "0.964 | \n", "0.909 | \n", "0.961 | \n", "0.95 | \n", "
K353-N501 | \n", "0.925 | \n", "0.939 | \n", "0.897 | \n", "0.920 | \n", "0.92 | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
A2750-G416 | \n", "0.000 | \n", "0.022 | \n", "0.000 | \n", "0.000 | \n", "0.01 | \n", "
T27-Y473 | \n", "0.003 | \n", "0.002 | \n", "0.015 | \n", "0.001 | \n", "0.01 | \n", "
D355-G502 | \n", "0.003 | \n", "0.006 | \n", "0.003 | \n", "0.002 | \n", "0.00 | \n", "
F456-K31 | \n", "0.003 | \n", "0.002 | \n", "0.002 | \n", "0.003 | \n", "0.00 | \n", "
L79-Y489 | \n", "0.000 | \n", "0.000 | \n", "0.009 | \n", "0.000 | \n", "0.00 | \n", "
102 rows × 5 columns
\n", "\n", " | WT | \n", "K417V | \n", "N439K | \n", "N439K/K417V | \n", "mean | \n", "
---|---|---|---|---|---|
G502-K353 | \n", "0.998 | \n", "0.999 | \n", "0.995 | \n", "0.997 | \n", "1.00 | \n", "
N487-Y83 | \n", "0.963 | \n", "0.966 | \n", "0.968 | \n", "0.969 | \n", "0.97 | \n", "
T500-Y41 | \n", "0.953 | \n", "0.971 | \n", "0.920 | \n", "0.962 | \n", "0.95 | \n", "
E35-Q493 | \n", "0.972 | \n", "0.964 | \n", "0.909 | \n", "0.961 | \n", "0.95 | \n", "
K353-N501 | \n", "0.925 | \n", "0.939 | \n", "0.897 | \n", "0.920 | \n", "0.92 | \n", "
G496-K353 | \n", "0.907 | \n", "0.942 | \n", "0.870 | \n", "0.918 | \n", "0.91 | \n", "
D355-T500 | \n", "0.863 | \n", "0.772 | \n", "0.896 | \n", "0.752 | \n", "0.82 | \n", "