{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Controlling Flareplots\n", "The purpose of this notebook is to show the different ways in which a user can select which residues get shown or hidden in a flareplot, and how they can be broken down into different types of fragments to inform about the molecular topology.\n", "\n", "We will try different ways of calling the method [plot_freqs_as_flareplot](https://proteinformatics.uni-leipzig.de/mdciao/api/generated/generated/mdciao.contacts.ContactGroup.html#mdciao.contacts.ContactGroup.plot_freqs_as_flareplot), which is a class method of the object [ContactGroup](https://proteinformatics.uni-leipzig.de/mdciao/api/generated/generated/mdciao.contacts.ContactGroup.html). Under the hood, the lower-level [mdciao.flare.freqs2flare](https://proteinformatics.uni-leipzig.de/mdciao/api/generated/generated/mdciao.flare.freqs2flare.html#mdciao.flare.freqs2flare) is at work, which is explained in [this other notebook](https://proteinformatics.uni-leipzig.de/mdciao/notebooks/04.Comparing_CGs_Flares.html#The-Lower-Level-Method-freqs2flare)\n", "\n", "
\n", " | TM3 | \n", "ICL2 | \n", "TM5 | \n", "ICL3 | \n", "TM6 | \n", "H8 | \n", "
---|---|---|---|---|---|---|
H.hahb | \n", "\n", " | \n", " | \n", " | \n", " | \n", " | 1.0 | \n", "
H.HB | \n", "\n", " | \n", " | \n", " | \n", " | \n", " | 1.0 | \n", "
G.h4s6 | \n", "\n", " | \n", " | 1.0 | \n", "1.0 | \n", "\n", " | \n", " |
G.H5 | \n", "3.0 | \n", "4.0 | \n", "5.0 | \n", "\n", " | 4.0 | \n", "\n", " |