mdciao.contacts.ContactGroup
============================

.. currentmodule:: mdciao.contacts

.. autoclass:: ContactGroup

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~ContactGroup.__init__
      ~ContactGroup.archive
      ~ContactGroup.binarize_trajs
      ~ContactGroup.copy
      ~ContactGroup.distribution_dicts
      ~ContactGroup.distributions_of_distances
      ~ContactGroup.frequency_as_contact_matrix
      ~ContactGroup.frequency_as_contact_matrix_CG
      ~ContactGroup.frequency_dataframe
      ~ContactGroup.frequency_delta
      ~ContactGroup.frequency_dict_by_consensus_labels
      ~ContactGroup.frequency_dicts
      ~ContactGroup.frequency_per_contact
      ~ContactGroup.frequency_spreadsheet
      ~ContactGroup.frequency_str_ASCII_file
      ~ContactGroup.frequency_sum_per_residue_idx_dict
      ~ContactGroup.frequency_sum_per_residue_names
      ~ContactGroup.frequency_table
      ~ContactGroup.frequency_to_bfactor
      ~ContactGroup.gen_ctc_labels
      ~ContactGroup.interface_frequency_matrix
      ~ContactGroup.n_ctcs_timetraces
      ~ContactGroup.plot_distance_distributions
      ~ContactGroup.plot_freqs_as_bars
      ~ContactGroup.plot_freqs_as_flareplot
      ~ContactGroup.plot_frequency_sums_as_bars
      ~ContactGroup.plot_interface_frequency_matrix
      ~ContactGroup.plot_neighborhood_freqs
      ~ContactGroup.plot_timedep_ctcs
      ~ContactGroup.plot_violins
      ~ContactGroup.relabel_consensus
      ~ContactGroup.relative_frequency_formed_atom_pairs_overall_trajs
      ~ContactGroup.repframes
      ~ContactGroup.residx2ctcidx
      ~ContactGroup.residx2resnamefragnamebest
      ~ContactGroup.retop
      ~ContactGroup.save
      ~ContactGroup.save_trajs
      ~ContactGroup.to_new_ContactGroup
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~ContactGroup.anchor_fragment_color
      ~ContactGroup.anchor_res_and_fragment_str
      ~ContactGroup.anchor_res_and_fragment_str_short
      ~ContactGroup.consensus_labels
      ~ContactGroup.consensuslabel2resname
      ~ContactGroup.ctc_labels
      ~ContactGroup.ctc_labels_short
      ~ContactGroup.ctc_labels_w_fragments_short_AA
      ~ContactGroup.fragment_names_best
      ~ContactGroup.interface_fragments
      ~ContactGroup.interface_labels_consensus
      ~ContactGroup.interface_residue_names_w_best_fragments_short
      ~ContactGroup.interface_residxs
      ~ContactGroup.interface_reslabels_short
      ~ContactGroup.is_interface
      ~ContactGroup.is_neighborhood
      ~ContactGroup.max_cutoff_Ang
      ~ContactGroup.means
      ~ContactGroup.modes
      ~ContactGroup.n_ctcs
      ~ContactGroup.n_frames
      ~ContactGroup.n_frames_total
      ~ContactGroup.n_trajs
      ~ContactGroup.name
      ~ContactGroup.neighbors_excluded
      ~ContactGroup.partner_fragment_colors
      ~ContactGroup.partner_res_and_fragment_labels
      ~ContactGroup.partner_res_and_fragment_labels_short
      ~ContactGroup.res_idxs_pairs
      ~ContactGroup.residue_names_long
      ~ContactGroup.residue_names_short
      ~ContactGroup.residx2consensuslabel
      ~ContactGroup.residx2fragnamebest
      ~ContactGroup.residx2resnamelong
      ~ContactGroup.residx2resnameshort
      ~ContactGroup.shared_anchor_residue_index
      ~ContactGroup.stacked_time_traces
      ~ContactGroup.time_arrays
      ~ContactGroup.time_max
      ~ContactGroup.time_min
      ~ContactGroup.top
      ~ContactGroup.topology
      ~ContactGroup.trajlabels